No Crank...HELP

Edit and Revised for full details.
I bought an EG hatch shell, and swapped in an H22, along the way iv painted the car, did a wire tuck, and just got the car put together.
Today after I got it to crank, it wouldn't start. No fuel or spark, but the pump is working, after i shorted it. And i hear the main relay clicking. And I also replaced it with another and still nothing.
At the same time, Iv had a code zero the whole time. So I took out the p13 and out in my p28, same thing. Tried a pt6 and pt3 which are both accord ecu's, but they should still work to an extent. And still a code zero. When I go to check the code all I get is a zero.
Im using the civic harness and I have 2 connections not used. One is the one paired with iat witch I believe you dont need. The other is the one that goes along with the windshield wiper motor that sits on the firewall. I thought that was also emissions and not used.
I have no clue what could be wrong, could I have gotten something mixed up in the dash somehow. Maybe were the wires go into the fusebox. And the ECU fuse is good.
The thermostat ground I moved to the back of the thermostat housing, and out a wire from there to the original location just to be safe. The transmission mount I went from a bolt that attaches the transmission casing to the clutch housing. The main ground Is in the rear on the spare tire thing.
Please help me figure this out guys, Im diying to hear my car start.
I bought an EG hatch shell, and swapped in an H22, along the way iv painted the car, did a wire tuck, and just got the car put together.
Today after I got it to crank, it wouldn't start. No fuel or spark, but the pump is working, after i shorted it. And i hear the main relay clicking. And I also replaced it with another and still nothing.
At the same time, Iv had a code zero the whole time. So I took out the p13 and out in my p28, same thing. Tried a pt6 and pt3 which are both accord ecu's, but they should still work to an extent. And still a code zero. When I go to check the code all I get is a zero.
Im using the civic harness and I have 2 connections not used. One is the one paired with iat witch I believe you dont need. The other is the one that goes along with the windshield wiper motor that sits on the firewall. I thought that was also emissions and not used.
I have no clue what could be wrong, could I have gotten something mixed up in the dash somehow. Maybe were the wires go into the fusebox. And the ECU fuse is good.
The thermostat ground I moved to the back of the thermostat housing, and out a wire from there to the original location just to be safe. The transmission mount I went from a bolt that attaches the transmission casing to the clutch housing. The main ground Is in the rear on the spare tire thing.
Please help me figure this out guys, Im diying to hear my car start.